Postgraduate research project

Investigation of fluorinated prolines by NMR spectroscopy

Funding
Competition funded View fees and funding
Type of degree
Doctor of Philosophy
Entry requirements
2:1 honours degree View full entry requirements
Faculty graduate school
Faculty of Engineering and Physical Sciences
Closing date

About the project

Some nasty peptides (conotoxins in carnivorous snails, neurotransmitter mimetics in snake venoms) contain uncommon conformers of the proline amino acid. This project is about controlling and measuring proline’s unusual dihedral angles, and improve nuclear magnetic resonance (NMR) methods to gather structural and dynamics information, using fluorinated prolines (FPro) as natural prolines' proxies.

Proline is cyclic, with distinctive dihedral angles that set it apart from other amino acids. With various degrees of 19F substitution, fluorination is expected to control its structural properties. In particular, fluorine is known for its large chemical shift anisotropy (CSA), and careful modelling by density functional theory explicitly including the different molecular conformations will be required. Modelling of FPro relaxation, using CSA that is dependent on conformation in slow exchange, hence outside the remit of Redfield theory, will be one of the key targets.

Theory and simulation will proceed hand in hand with experiments under a variety of conditions, to test theoretical models, justify the experimentally determined values to embrace conformational disorder as intrinsic part of the model. The study of relaxation properties as function of magnetic fields, temperature and solvent viscosity will facilitate this task. The experimental methods will be strengthened by quantum optimal control excitation of the FPro spin system, building on fluorine-edited selective transfer approach (FESTA) methods, with the objective to extend to Pro-containing small peptides and proteins, where peak overlap is a significant challenge due to the complexity and size of the spin systems.

Moreover, proline appears in interesting places of regular proteins: sharp turns, secondary structure junctions, and disordered regions. Further attention will be on FPro interactions with neighbouring residues, such as polyproline chains, as well as with aromatic amino acids, as π-interactions are structurally very important and may be revealed through their effect on the internal Hamiltonian and on the proline conformation and dynamics.

The School of Chemistry and Chemical Engineering is committed to promoting equality, diversity inclusivity as demonstrated by our Athena SWAN award. We welcome all applicants regardless of their gender, ethnicity, disability, sexual orientation or age, and will give full consideration to applicants seeking flexible working patterns and those who have taken a career break. The University has a generous maternity policy, onsite childcare facilities, and offers a range of benefits to help ensure employees’ well-being and work-life balance. The University of Southampton is committed to sustainability and has been awarded the Platinum EcoAward.